Bioinformatics data analyst
Sahlgrenska akademin vid Göteborgs universitet / Datajobb / Göteborg
2012-10-01
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Bioinformatics data analyst
Type of employment: Fixed-term employment, 2 years
Extent: 100 %
Location: Core Facilities, Göteborg
First day of employment: As agreed
Reference number: PER 2012/164
Job assignments
The position as a bioinformatics data analyst within the Bioinformatics Infrastructure for Life Sciences (BILS) network involve providing service and advice for multiple projects at the universities and hospitals throughout the country. At Genomics, you work in a core network including researchers, geneticists, clinicians, data system engineers, bioinformaticians and biostatisticians in the development of data management pipelines for the clinic. You plan your daily work together with the core manager and you are responsible for compiling and presenting the results, so we assume that you can work independently. The role as a BILS resource and consultant places high demands on your social, communicative and pedagogical ability.
Your daily tasks:
The daily work includes establishment of informatics infrastructure and development of data analysis pipelines for high-throughput data, mainly next generation sequencing (NGS) data. You will work in close collaboration with application experts and data system engineers at the Swedish National Infrastructure for Computing (SNIC) centers (maily C3SE, UPPNEX-UPPMAX and NSC), the bioinformatics service unit at Genomics Core Facility, as well as with existing pre-clinical research groups at the local universities (Gothenburg University and Chalmers University) and clinicians at the Sahlgrenska Hospital. Together with this core network your specific responsibility will be to develop data analysis pipelines, software programs, data transfer and data management for the clinic. This involve handling clinical data from chiefly human targeted resequencing projects, and put high demands on quality assessment and secure systems in relation to ethical considerations and legislations. The pipelines will futher be implemented in bioinformatics service unit as a routine fee-for-service for clinical customers. Since development of large-scale data informatics structures and analysis pipelines requires custom programs, a part of your work will be to quickly become familiar with new software and to write your own program code. This means that a major portion of your tasks will include programming.
Qualifications
You should have background in bioinformatics, computer science, statistics, mathematics or equivalent. You must have a solid background in programming languages such as Java, C and/or C++, and in scripting languages such as Perl or Python. Experience on setting up secure systems is a must. Familiarity with UNIX/Linux environments and NGS data analysis will be valuable. You should be an outspoken person as well as enthusiastic and social. As an employee at a Core Facility, responsiveness and flexibility are important characteristics in the meeting with various issues and different project approaches.
Publiceringsdatum2012-10-01Arbetstider och omfattningVisstidsanställning 6 månader eller längre
Heltid
ErsättningFast lön
Så ansöker duSista dag att ansöka är 2012-10-17
Please apply online at
www.gu.se/ledigaanställningar Klicka på denna länk för att göra din ansökan .
Complementary documents, such as publications/books should be sent to the following address: Personalavdelningen, Sahlgrenska akademins kansli, Box 400, 405 30 Göteborg. Reference number should be clearly stated when sending complementary document
Ange följande referens när du ansöker: "PER 2012/164"
Ansökan kan tyvärr inte göras via e-post.
KontaktFrida Abel, Manager 031 786 3478,
frida.abel@gu.seMarcela Davila Lopez, 031 786 9717,
marcela.davila@gu.seFacklig kontaktOFR/S: Stefan Schedin 031 786 1167,
stefan.schedin@socav.gu.seSACO: Martin Björkman 031 786 3608,
martin.bjorkman@amm.gu.seSEKO: Lennart Olsson 031 786 1173,
lennart.olsson@gu.seFöretagSahlgrenska akademin vid Göteborgs universitet
AdressSahlgrenska akademin vid Göteborgs universitet
Box 400
40530 GÖTEBORG
KontorsadressMedicinaregatan 3
Övriga kontaktuppgifterTelefonnummer: 031-7860000
Jobbnummer 1354082
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