1:e Forskningsingenjör/Bioinformatiker
Sahlgrenska akademin vid Göteborgs universitet / Datajobb / Göteborg
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hela Sverige Visa alla jobb hos Sahlgrenska akademin vid Göteborgs universitet i Göteborg The Core Facilities resource centers give researchers access to advanced technical equipment and skilled expertise in a number of disciplines within the Sahlgrenska Academy. Genomics Core Faciliy performs genetic analyses from the initial planning of studies, including dimensioning and choice of design, through the laboratory processes to the final evaluation of the results. For more information, see
www.genomics.cf.gu.se.The position as a bioinformatics data analyst within the Bioinformatics Infrastructure for Life Sciences (BILS) network involve providing service and advice for multiple projects at the universities and hospitals throughout the country. At Genomics, you work in a core network including researchers, geneticists, clinicians, data system engineers, bioinformaticians and biostatisticians in the development of data management pipelines for the clinic. You plan your daily work together with the core manager and you are responsible for compiling and presenting the results, so we assume that you can work independently. The role as a BILS resource and consultant places high demands on your social, communicative and pedagogical ability.
Your daily tasks:
The daily work includes establishment of informatics infrastructure and development of data analysis pipelines for high-throughput data, mainly next generation sequencing (NGS) data. You will work in close collaboration with application experts and data system engineers at the Swedish National Infrastructure for Computing (SNIC) centers (maily C3SE, UPPNEX-UPPMAX and NSC), the bioinformatics service unit at Genomics Core Facility, as well as with existing pre-clinical research groups at the local universities (Gothenburg University and Chalmers University) and clinicians at the Sahlgrenska Hospital. Together with this core network your specific responsibility will be to develop data analysis pipelines, software programs, data transfer and data management for the clinic. This involve handling clinical data from chiefly human targeted resequencing projects, and put high demands on quality assessment and secure systems in relation to ethical considerations and legislations. The pipelines will futher be implemented in bioinformatics service unit as a routine fee-for-service for clinical customers. Since development of large-scale data informatics structures and analysis pipelines requires custom programs, a part of your work will be to quickly become familiar with new software and to write your own program code. This means that a major portion of your tasks will include programming.
Qualifications:
You should have background in bioinformatics, computer science, statistics, mathematics or equivalent. You must have a solid background in programming languages such as Java, C and/or C++, and in scripting languages such as Perl or Python. Experience on setting up secure systems is a must. Familiarity with UNIX/Linux environments and NGS data analysis will be valuable. You should be an outspoken person as well as enthusiastic and social. As an employee at a Core Facility, responsiveness and flexibility are important characteristics in the meeting with various issues and different project approaches.
For further information contact
Frida Abel, Core manager at Genomics Core Facility, tel 31 786 3478,
frida.abel@gu.seMarcela Davila Lopez, Bioinformatics data analyst at Genomics Core Facility tel 31 786 9717,
marcela.davila@gu.seUnion representatives:
SACO Martin Björkman, phone 31 786 3608,
OFR:s Stefan Schedin, phone 31 786 1167,
SEKO, Lennart Olsson, phone 31 786 1117
Publiceringsdatum2012-08-16Arbetstider och omfattningVisstidsanställning 6 månader eller längre
Heltid
The position is for a limited period of 2 years at Genomics, Core Facilities.
ErsättningFast lön
Så ansöker duSista dag att ansöka är 2012-09-17
Please apply online:
Klicka på denna länk för att göra din ansökanComplementary documents, such as publications/books should be sent to the following address: Personalavdelningen, Sahlgrenska akademins kansli, Box 400, 405 30 Göteborg. Reference number should be clearly stated when sending
Ange följande referens när du ansöker: PER 2012/164
Ansökan kan tyvärr inte göras via e-post.
FöretagSahlgrenska akademin vid Göteborgs universitet
AdressSahlgrenska akademin vid Göteborgs universitet
Box 400
40530 GÖTEBORG
KontorsadressMedicinaregatan 3
Övriga kontaktuppgifterTelefonnummer: 031-7860000
Jobbnummer 1316141
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